Need code for my problem

Myseq*.tsv file is a output file. I need file in this format, this is matrix form

DUplex_subset is a input file.

For example:

>hsa-miR-576-3p ENST00000379407

Forward: Score: 149.000000 Q:2 to 18 R:2388 to 2409 Align Len (16) (75.00%) (87.50%) Energy:-9.900000

(mRNA) Ref: 5' aagcaTAATTCTTACATATCTg 3'

:|||| || ||:||||

(miRNA) Query: 3' cuaagGUUAAAAAGGUGUAGAa 5'

Here Query is miRNA and Ref are mRNA. Extract only capital letter alignment is seed region and the lowercase alphabet is non-seed region.

I need to extract each alignment of seed only and put it in matrix form and give number to each as like in output file


Note: extract only which is in bold letters in each column:

miRNA mRNA R Pos1 Pos2 Pos3 Pos4 Pos5 Pos6 Pos7

hsa-miR-576-3p ENST00000379407 2388 to 2409 TA GC TA AU TU AG AG

Give the number to each alignment pairing:

Watson and Crick(GC, AU)-- 4

mismatch--- -1

GU ------ 1

Other mismatches ------ 0

Gap -------- -2

i sent my practice code also

Taidot: Perl, Python

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Tietoa työnantajasta:
( 0 arvostelua ) Germany

Projektin tunnus: #14862214

12 freelanceria on tarjonnut keskimäärin 33 € tähän työhön

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111 € EUR 1 päivässä
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Hi, can I get a bit more explanation? I'm a good python developer and can do this for you. I need to discuss the details with you a bit more. Relevant Skills and Experience python Proposed Milestones €19 EUR - write Lisää

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python Relevant Skills and Experience Hello, I have read your job posting carefully. I have many experiences in programming over 10 years. I am highly qualified in your project. Please contact me. Thanks Proposed Mil Lisää

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I can resolve this in Python same day.

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Expert in Perl and Python. And done mapping and regex in perl and python to extract code from different format as an input and provide desired output of it. Relevant Skills and Experience Expert in perl and python Pr Lisää

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