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Need code for my problem

Myseq*.tsv file is a output file. I need file in this format, this is matrix form

DUplex_subset is a input file.

For example:

>hsa-miR-576-3p ENST00000379407

Forward: Score: 149.000000 Q:2 to 18 R:2388 to 2409 Align Len (16) (75.00%) (87.50%) Energy:[url removed, login to view]

(mRNA) Ref: 5' aagcaTAATTCTTACATATCTg 3'

:|||| || ||:||||

(miRNA) Query: 3' cuaagGUUAAAAAGGUGUAGAa 5'

Here Query is miRNA and Ref are mRNA. Extract only capital letter alignment is seed region and the lowercase alphabet is non-seed region.

I need to extract each alignment of seed only and put it in matrix form and give number to each as like in output file

Output:

Note: extract only which is in bold letters in each column:

miRNA mRNA R Pos1 Pos2 Pos3 Pos4 Pos5 Pos6 Pos7

hsa-miR-576-3p ENST00000379407 2388 to 2409 TA GC TA AU TU AG AG

Give the number to each alignment pairing:

Watson and Crick(GC, AU)-- 4

mismatch--- -1

GU ------ 1

Other mismatches ------ 0

Gap -------- -2

i sent my practice code also

Taidot: Perl, Python

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About the Employer:
( 0 reviews ) Germany

Projektin tunnus: #14862214

13 freelanceria on tarjonnut keskimäärin 33 € tähän työhön

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koyelpghosh

I can do this. Very much familiar with the work. Relevant Skills and Experience Bioinformatics, Python Proposed Milestones €30 EUR - I will complete your project Please PM

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blitz003

Hi, can I get a bit more explanation? I'm a good python developer and can do this for you. I need to discuss the details with you a bit more. Relevant Skills and Experience python Proposed Milestones €19 EUR - write Lisää

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Darui

I'm experienced in Python document processing. I have checked your files. I can. I finished my last python task in several hours instead of 5 days as I set when bidding. I'm efficient. Trust me. Relevant Skills and Ex Lisää

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worldc584

python Relevant Skills and Experience Hello, I have read your job posting carefully. I have many experiences in programming over 10 years. I am highly qualified in your project. Please contact me. Thanks Proposed Mil Lisää

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JohnMMartinelli

I can resolve this in Python same day.

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AqPandith

Hi, My name is Aqpandith, I have 5+ years experience in Python, Java, Perl, Programming, Asterisk PBX. I am expert in in Python, JavaScript, Code, Programming, Perl, Metatrader. I have completed lot of projects in Pyth Lisää

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rajhansh

quite an easy I can help you in best possible manner. Perl Developer with 6+Years of experience in perl Development

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kpushp08

Expert in Perl and Python. And done mapping and regex in perl and python to extract code from different format as an input and provide desired output of it. Relevant Skills and Experience Expert in perl and python Pr Lisää

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MaryumAkhter1

i can do this for you Relevant Skills and Experience i have an experience of 1.5-2 years in this field Proposed Milestones €23 EUR - 1

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kcbStar

Hello, I am interested in this project and so wanted to discuss more about it in details. I sincerely hope that you will believe me and hire me. Thanks Relevant Skills and Experience a Proposed Milestones €30 EUR - a

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