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2074 Bioinformatics GUI

A GUI version of the Bioinfomatics software MUSCLE Background The software MUSCLE is a command line bioinformatics program for a program for creating multiple alignments of amino acid or nucleotide sequences. The source code for MUSCLE is publicly available (see links below). Project Description The aim of the project is to develop a graphical version of the MUSCLE software that is easier for biologists to use. In addition, I would also like to incorporate some new functionality to make it easier to import and export data. Project Requirements • A graphical Window version of MUSCLE. • An ability to display the resulting data output. The MUSCLE software can export the resulting data alignment in html so this should be straightforward. • A new function allowing sets of data files not in FASTA format to be imported. This should be fairly simple as it will only involve reading in sets of text files and concatenating them together. • An export function that will allow the resulting formated data to be exported to other text programs, maybe in rich text format. Project Desirable Features • Develop a version for Mac OS X (QT might be an option). • Optimize the code to improve processing speed (I don't know how viable this is). Conclusion This should be an interesting and not very difficult project. I have a range of bioinformatics projects to be accomplished so I interested in establishing a long term relationship. I am also willing to select programers with no feedback provide they are keen and can show me that the have the skills required to accomplish to the project. Please PM with any questions you have. Links [url removed, login to view] (MUSCLE homepage) [url removed, login to view] (Paper describing MUSCLE)

Taidot: kaikki käy, C-ohjelmointi

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About the Employer:
( 34 reviews ) Woollahra, Australia

Projektin tunnus: #1752943